Kytococcus sedentarius DSM 20547

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Kytococcaceae

Genus

Kytococcus

Description

Kytococcus sedentarius DSM 20547 is a gram-positive, coccoid-shaped microbe that thrives in mesophilic temperatures, categorized as a chemoheterotroph, and can be found on all body sites in various species, including humans, animals, and insects, and is an obligate aerobe. The gram-positive characteristic indicates that the microbe has a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain used in the gram staining procedure, appearing purple under a microscope. The coccoid shape of Kytococcus sedentarius DSM 20547 allows it to thrive in various environments, as this shape provides a large surface area for nutrient uptake and interaction with its surroundings. As a mesophile, this microbe prefers moderate temperatures, typically between 20-45°C, which is ideal for its growth and metabolic processes.As a chemoheterotroph, Kytococcus sedentarius DSM 20547 relies on organic compounds for energy and carbon, obtaining these nutrients by breaking down complex molecules into simpler ones. This ability allows the microbe to inhabit various body sites, including skin, mucous membranes, and gastrointestinal tracts, where it can feed on available organic matter. The obligate aerobe nature of Kytococcus sedentarius DSM 20547 means that it requires oxygen to grow and survive, which is essential for its energy-producing metabolic pathways. Kytococcus sedentarius DSM 20547 has been found to produce pigments, and its unique characteristics make it a subject of study in the field of microbiology, particularly in the context of its potential applications in biotechnology and environmental science, where its ability to break down complex organic matter can be harnessed for bioremediation purposes.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyKytococcaceae
GenusKytococcus
SpeciesKytococcus sedentarius
StrainDSM 20547

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Kytococcus sedentarius DSM 20547
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature29
Temperature rangeMesophilic
HabitatMarine - Skin microflora
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementTetrads
SporulationNonsporulating
Energy sourceNot Available
PathogenicityYes

Genome Summary

Kytococcus sedentarius DSM 20547

Accession NumberNC_013169.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2631 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaKSED_RS00005Not Available+257 - 172953272.0
dna polymerase iii subunit betaKSED_RS00010Not Available+2317 - 345339725.1
phosphogluconate dehydrogenase (nad(+)-dependent, decarboxylating)KSED_RS00015Not Available+3514 - 449435075.6
dna replication/repair protein recfKSED_RS00020Not Available+4520 - 569242267.3
duf721 domain-containing proteinKSED_RS00025Not Available+5833 - 627915962.0
dna topoisomerase (atp-hydrolyzing) subunit bKSED_RS00030Not Available+6516 - 862177320.8
dna gyrase subunit aKSED_RS00035Not Available+8710 - 1133796899.6
duf3566 domain-containing proteinKSED_RS00040Not Available+11334 - 1182216668.2
Trna-ileNot AvailableNot Available+11941 - 12014Not Available
Trna-alaNot AvailableNot Available+12031 - 12103Not Available

Displaying genes 1 – 10 of 2687 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

235 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001593L-xylo-hex-3-ulonolactoneC6H8O6Chemical structure of L-xylo-hex-3-ulonolactoneNot available
Average176.1241Da
Monoisotopic176.032087988Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 235 metabolites