Kytococcus sedentarius DSM 20547

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Kytococcaceae

Genus

Kytococcus

Description

Kytococcus sedentarius DSM 20547 is a gram-positive, coccoid-shaped microbe that thrives in mesophilic temperatures, categorized as a chemoheterotroph, and can be found on all body sites in various species, including humans, animals, and insects, and is an obligate aerobe. The gram-positive characteristic indicates that the microbe has a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain used in the gram staining procedure, appearing purple under a microscope. The coccoid shape of Kytococcus sedentarius DSM 20547 allows it to thrive in various environments, as this shape provides a large surface area for nutrient uptake and interaction with its surroundings. As a mesophile, this microbe prefers moderate temperatures, typically between 20-45°C, which is ideal for its growth and metabolic processes.As a chemoheterotroph, Kytococcus sedentarius DSM 20547 relies on organic compounds for energy and carbon, obtaining these nutrients by breaking down complex molecules into simpler ones. This ability allows the microbe to inhabit various body sites, including skin, mucous membranes, and gastrointestinal tracts, where it can feed on available organic matter. The obligate aerobe nature of Kytococcus sedentarius DSM 20547 means that it requires oxygen to grow and survive, which is essential for its energy-producing metabolic pathways. Kytococcus sedentarius DSM 20547 has been found to produce pigments, and its unique characteristics make it a subject of study in the field of microbiology, particularly in the context of its potential applications in biotechnology and environmental science, where its ability to break down complex organic matter can be harnessed for bioremediation purposes.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyKytococcaceae
GenusKytococcus
SpeciesKytococcus sedentarius
StrainDSM 20547

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Kytococcus sedentarius DSM 20547
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature29
Temperature rangeMesophilic
HabitatMarine - Skin microflora
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementTetrads
SporulationNonsporulating
Energy sourceNot Available
PathogenicityYes

Genome Summary

Kytococcus sedentarius DSM 20547, complete sequence.

Gene Summary

Adenine Count

397912 bp

Thymine Count

392268 bp

Guanine Count

996952 bp

Cytosine Count

997892 bp

Genome Length

2785024 bp

Protein-coding Genes

2631 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chromosomal replication initiator protein dnaaKSED_RS00005Not AvailablePositive257 - 172953272.0
dna polymerase iii subunit betaKSED_RS00010Not AvailablePositive2317 - 345339725.1
phosphogluconate dehydrogenase (nad(+)-dependent, decarboxylating)KSED_RS00015Not AvailablePositive3514 - 449435075.6
dna replication/repair protein recfKSED_RS00020Not AvailablePositive4520 - 569242267.3
duf721 domain-containing proteinKSED_RS00025Not AvailablePositive5833 - 627915962.0
dna topoisomerase (atp-hydrolyzing) subunit bKSED_RS00030Not AvailablePositive6516 - 862177320.8
dna gyrase subunit aKSED_RS00035Not AvailablePositive8710 - 1133796899.6
duf3566 domain-containing proteinKSED_RS00040Not AvailablePositive11334 - 1182216668.2
Trna-ileNot AvailableNot AvailablePositive11941 - 12014Not Available
Trna-alaNot AvailableNot AvailablePositive12031 - 12103Not Available

Displaying genes 1 – 10 of 2687 in total

Metabolites

1905 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da

Displaying 1–10 of 1905 metabolites

Health Effects

No health effects information available for this bacterium.