Bacteroides sp. 4_1_36

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides sp. 4_1_36 is a gram-negative, rod-shaped bacterium that thrives in anaerobic environments, exhibiting a temperature preference for mesophilic conditions. As a heterotroph, it derives energy from organic compounds, playing a crucial role in various ecosystems, particularly in the human gut microbiome. This microorganism is typically found in the intestines, oral cavity, and other body sites across different species, where it contributes to the complex interplay of bacterial communities. The gram-negative nature of Bacteroides sp. 4_1_36 is characterized by its thin peptidoglycan layer, surrounded by an outer membrane containing lipopolysaccharides, which can play a role in the bacterium's pathogenic potential and immune response evasion. Its rod-shaped morphology allows for efficient mobility and colonization in diverse environments, particularly the gastrointestinal tract, where it participates in the fermentation of carbohydrates and other substrates. As a mesophilic organism, Bacteroides sp. 4_1_36 thrives optimally at moderate temperatures, which corresponds with the internal conditions of the human body, facilitating its survival and metabolic activities. Being a heterotroph, it is capable of breaking down complex organic materials, significantly contributing to the digestion process by aiding in nutrient absorption and synthesis of essential vitamins, such as vitamin K. Furthermore, Bacteroides sp. 4_1_36 has a role in maintaining gut homeostasis; its presence can influence the composition of the gut microbiota and modulate immune responses. Dysbiosis, or an imbalance in these microbial communities, can lead to various health issues, highlighting the importance of this microbe in human health. Notably, the species is also studied for its potential impact on obesity, inflammatory bowel diseases, and other metabolic disorders.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides sp. 4_1_36
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides sp. 4_1_36


Gene Summary

Adenine Count

1401594 bp

Thymine Count

1377713 bp

Guanine Count

1194015 bp

Cytosine Count

1230227 bp

Genome Length

5203649 bp

Protein-coding Genes

3775 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinHMPREF1007_00001Not Available-488 - 109622898.9
transposaseHMPREF1007_00002Not Available-1674 - 200913141.7
hypothetical proteinHMPREF1007_00003Not Available-2093 - 281227051.8
outer membrane efflux proteinHMPREF1007_00004Not Available-2999 - 439950745.5
acrb/acrd/acrf family proteinHMPREF1007_00005Not Available-4431 - 7622116258.0
efflux transporterHMPREF1007_00006Not Available-7643 - 875840188.1
hypothetical proteinHMPREF1007_00007Not Available-8764 - 89346666.37
transcriptional regulatorHMPREF1007_00008Not Available+8949 - 954523100.7
arac family bacterial regulatory helix-turn-helix proteinHMPREF1007_00009Not Available+9526 - 97869961.02
glycosyl hydrolase family 20HMPREF1007_00010Not Available+9877 - 1154462721.8

Displaying genes 1 – 10 of 7561 in total

Metabolites

283 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 283 metabolites