Treponema pallidum subsp. pallidum SS14

Gram-negativeSpirillaNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Spirochaetia

Order

Spirochaetales

Family

Treponemataceae

Genus

Treponema

Description

Treponema pallidum, is a helical to sinusoidal spirochaete with 2 membranes, a thin peptidoglycan layer and flagella that lie in the periplasmic space. It is the causative agent of syphilis, plays a role in the transmission and acquisition of HIV, and is a major cause of stillbirth and perinatal morbidity in the developing world. Even if the primary infection is localized, bacteria rapidly disseminate and cause manifestations in the cardiovascular and nervous systems. It is an obligate human parasite.The first T.pallidum strain to be sequenced was strain Nichols, which was isolated in 1912 from the cerebrospinal fluid of patient with secondary syphilis. It has since been passed in rabbits for nearly a century. This Chicago strain was isolated in 1951, has not been passed continually in rabbits and has had an important role in research on antigenic variation, immune escape and pathogen persistence. There are 44 nucleotide substitutions, 21 deletions and 75 insertions compared to the Nichols genome (adapted from PMID). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassSpirochaetia
OrderSpirochaetales
FamilyTreponemataceae
GenusTreponema
SpeciesTreponema pallidum
StrainSS14

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Treponema pallidum subsp. pallidum SS14
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityYes

Genome Summary

Treponema pallidum subsp. pallidum SS14


Gene Summary

Adenine Count

268126 bp

Thymine Count

269671 bp

Guanine Count

302740 bp

Cytosine Count

298441 bp

Genome Length

1139457 bp

Protein-coding Genes

1011 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chromosomal replication initiator protein dnaaTPASS_RS00005Not AvailablePositive4 - 139852968.4
dna polymerase iii subunit betaTPASS_RS00010Not AvailablePositive1641 - 275641292.8
dna replication/repair protein recfTPASS_RS00015Not AvailablePositive2701 - 383444064.4
duf721 domain-containing proteinTPASS_RS00020Not AvailablePositive3827 - 426416338.6
dna topoisomerase (atp-hydrolyzing) subunit aTPASS_RS00025Not AvailablePositive4391 - 683289931.9
duf3798 domain-containing proteinTPASS_RS05700Not AvailablePositive7161 - 796729412.2
hypothetical proteinTPASS_RS05705Not AvailablePositive7991 - 826010402.5
major outer sheath c-terminal domain-containing proteinTPASS_RS05710Not AvailableNegative8340 - 926033587.1
ribonuclease p protein componentTPASS_RS05720Not AvailableNegative9273 - 1013431125.2
major outer sheath c-terminal domain-containing proteinTPASS_RS00050Not AvailablePositive10396 - 1237871110.1

Displaying genes 1 – 10 of 1065 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

84 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002593(2E)-dodecenoyl-CoAC33H52N7O17P3SChemical structure of (2E)-dodecenoyl-CoA1066-12-2
Average943.789Da
Monoisotopic943.2353235Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0002858all-trans-undecaprenyl phosphateC55H89O4PChemical structure of all-trans-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm00029834-CDP-2-C-methyl-D-erythritolC14H23N3O14P2Chemical structure of 4-CDP-2-C-methyl-D-erythritolNot available
Average519.294Da
Monoisotopic519.0666236Da
BASm00030584-CDP-2-C-methyl-D-erythritol 2-phosphateC14H22N3O17P3Chemical structure of 4-CDP-2-C-methyl-D-erythritol 2-phosphateNot available
Average597.257Da
Monoisotopic597.0184016Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da

Displaying 1–10 of 84 metabolites

Health Effects

No health effects information available for this bacterium.