Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
45784 bp
Thymine Count
44168 bp
Guanine Count
65969 bp
Cytosine Count
66140 bp
Genome Length
222061 bp
Protein-coding Genes
208 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tn3 family transposase | BJD13_RS00155 | Not Available | Negative | 29664 - 32627 | 112499.0 |
| glucosaminidase domain-containing protein | BJD13_RS00160 | Not Available | Negative | 32672 - 33604 | 34524.2 |
| dna-binding protein | BJD13_RS00165 | Not Available | Positive | 33799 - 34851 | 39427.2 |
| hypothetical protein | BJD13_RS00170 | Not Available | Negative | 34872 - 35630 | 28877.7 |
| helix-turn-helix domain-containing protein | BJD13_RS00175 | Not Available | Positive | 35751 - 36101 | 12953.7 |
| transcriptional regulator copl | BJD13_RS00180 | Not Available | Positive | 36276 - 36695 | 14254.3 |
| copper resistance system multicopper oxidase | BJD13_RS00185 | Not Available | Positive | 36809 - 38677 | 68113.9 |
| copper resistance protein b | BJD13_RS00190 | Not Available | Positive | 38674 - 39798 | 40121.1 |
| c-type cytochrome | BJD13_RS25255 | Not Available | Positive | 39811 - 40653 | 29449.2 |
| duf411 domain-containing protein | BJD13_RS00200 | Not Available | Positive | 40724 - 41266 | 19220.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |