Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
45784 bp
Thymine Count
44168 bp
Guanine Count
65969 bp
Cytosine Count
66140 bp
Genome Length
222061 bp
Protein-coding Genes
208 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| conjugative transfer system coupling protein trad | BJD13_RS00105 | Not Available | Positive | 18715 - 20568 | 68206.4 |
| duf4400 domain-containing protein | BJD13_RS00110 | Not Available | Positive | 20568 - 21215 | 23721.4 |
| hypothetical protein | BJD13_RS00115 | Not Available | Positive | 21231 - 22052 | 29539.5 |
| is3-like element isxac3 family transposase | BJD13_RS00125 | Not Available | Positive | 22750 - 23894 | 44152.9 |
| atp-dependent helicase | BJD13_RS00130 | Not Available | Negative | 24112 - 25866 | 64992.6 |
| hypothetical protein | BJD13_RS00135 | Not Available | Negative | 25866 - 26684 | 29252.8 |
| hypothetical protein | BJD13_RS00140 | Not Available | Positive | 27483 - 27767 | 10105.3 |
| hypothetical protein | BJD13_RS24415 | Not Available | Positive | 27927 - 28115 | 6719.1 |
| single-stranded dna-binding protein | BJD13_RS24420 | Not Available | Positive | 28324 - 28938 | 21770.8 |
| hypothetical protein | BJD13_RS00150 | Not Available | Positive | 29027 - 29641 | 22015.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |