Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
45784 bp
Thymine Count
44168 bp
Guanine Count
65969 bp
Cytosine Count
66140 bp
Genome Length
222061 bp
Protein-coding Genes
208 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | BJD13_RS00510 | Not Available | Negative | 113754 - 114701 | 32662.5 |
| tolc family protein | BJD13_RS00515 | Not Available | Negative | 114698 - 115975 | 45762.5 |
| hypothetical protein | BJD13_RS00520 | Not Available | Negative | 116062 - 116418 | 12520.7 |
| cation transporter | BJD13_RS00525 | Not Available | Negative | 116415 - 117032 | 21747.0 |
| merr family transcriptional regulator | BJD13_RS00530 | Not Available | Positive | 117138 - 117551 | 15233.2 |
| site-specific integrase | BJD13_RS00535 | Not Available | Positive | 117548 - 118819 | 46896.1 |
| tn3 family transposase | BJD13_RS00540 | Not Available | Positive | 118844 - 121837 | 112799.0 |
| hypothetical protein | BJD13_RS00545 | Not Available | Positive | 122224 - 123534 | 47675.9 |
| hypothetical protein | BJD13_RS00550 | Not Available | Positive | 123692 - 124030 | 12466.4 |
| hypothetical protein | BJD13_RS24440 | Not Available | Positive | 124081 - 124491 | 14799.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |