Methylorubrum extorquens CM4

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Methylobacteriaceae

Genus

Methylorubrum

Description

Methylorubrum extorquens CM4 is a Gram-negative, rod-shaped bacterium that primarily exists in terrestrial habitats and functions as a methylotroph, utilizing methanol and other one-carbon compounds as its energy source. This microbe is typically found in single cells or pairs, reflecting its cellular arrangement. It thrives optimally at a temperature of 30.0°C, indicating a preference for moderate environmental conditions. As an aerobic organism, Methylorubrum extorquens CM4 requires oxygen for its metabolic processes, which is characteristic of many methylotrophic bacteria that oxidize methanol and other methyl compounds to generate energy. The ability to metabolize these compounds not only allows this microbe to occupy specific ecological niches but also highlights its potential role in carbon cycling within its habitat. The trait of being a methylotroph suggests that Methylorubrum extorquens CM4 may contribute to the degradation of methanol and other methylated substrates in its environment, which can have implications for biogeochemical processes. This metabolic capability may also situate it as a beneficial organism in biotechnological applications aimed at waste treatment or bioremediation, particularly in contexts where methylated compounds are present. Overall, its specialized metabolism underscores the importance of Methylorubrum extorquens CM4 in terrestrial ecosystems, particularly in the context of carbon transformation and energy flow.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyMethylobacteriaceae
GenusMethylorubrum
SpeciesMethylorubrum extorquens
StrainCM4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Methylorubrum extorquens CM4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles - Pairs
SporulationNot Available
Energy sourceMethylotroph
PathogenicityNot Available

Genome Summary

Methylorubrum extorquens CM4 plasmid pCMU02, complete sequence.

Gene Summary

Adenine Count

3942 bp

Thymine Count

4229 bp

Guanine Count

7135 bp

Cytosine Count

7311 bp

Genome Length

22617 bp

Protein-coding Genes

34 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf2865 domain-containing proteinMCHL_RS25395Not AvailablePositive5580501 - 558160138113.6
ompa family proteinMCHL_RS25400Not AvailablePositive5581765 - 558393680765.0
mfs transporterMCHL_RS25405Not AvailablePositive5584111 - 558532542883.2
voc family proteinMCHL_RS25410Not AvailablePositive5585414 - 558590517523.9
class i sam-dependent methyltransferaseMCHL_RS25415Not AvailablePositive5585902 - 558668127700.6
glutamate--trna ligaseMCHL_RS25420Not AvailableNegative5586678 - 558802748857.1
hlyd family secretion proteinMCHL_RS25425Not AvailableNegative5588084 - 558916338777.1
duf1656 domain-containing proteinMCHL_RS25430Not AvailableNegative5589160 - 55893546996.04
fusc family proteinMCHL_RS25435Not AvailableNegative5589363 - 559139971415.0
duf4345 domain-containing proteinMCHL_RS25440Not AvailableNegative5591396 - 559183015576.6

Displaying genes 5631 – 5640 of 5804 in total

Metabolites

1716 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1716 metabolites

Health Effects

No health effects information available for this bacterium.