Methylorubrum extorquens CM4

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Methylobacteriaceae

Genus

Methylorubrum

Description

Methylorubrum extorquens CM4 is a Gram-negative, rod-shaped bacterium that primarily exists in terrestrial habitats and functions as a methylotroph, utilizing methanol and other one-carbon compounds as its energy source. This microbe is typically found in single cells or pairs, reflecting its cellular arrangement. It thrives optimally at a temperature of 30.0°C, indicating a preference for moderate environmental conditions. As an aerobic organism, Methylorubrum extorquens CM4 requires oxygen for its metabolic processes, which is characteristic of many methylotrophic bacteria that oxidize methanol and other methyl compounds to generate energy. The ability to metabolize these compounds not only allows this microbe to occupy specific ecological niches but also highlights its potential role in carbon cycling within its habitat. The trait of being a methylotroph suggests that Methylorubrum extorquens CM4 may contribute to the degradation of methanol and other methylated substrates in its environment, which can have implications for biogeochemical processes. This metabolic capability may also situate it as a beneficial organism in biotechnological applications aimed at waste treatment or bioremediation, particularly in contexts where methylated compounds are present. Overall, its specialized metabolism underscores the importance of Methylorubrum extorquens CM4 in terrestrial ecosystems, particularly in the context of carbon transformation and energy flow.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyMethylobacteriaceae
GenusMethylorubrum
SpeciesMethylorubrum extorquens
StrainCM4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Methylorubrum extorquens CM4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles - Pairs
SporulationNot Available
Energy sourceMethylotroph
PathogenicityNot Available

Genome Summary

Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence.

Gene Summary

Adenine Count

64734 bp

Thymine Count

63255 bp

Guanine Count

125773 bp

Cytosine Count

126445 bp

Genome Length

380207 bp

Protein-coding Genes

337 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinMCHL_RS27895Not AvailableNegative105 - 88427838.1
type ii toxin-antitoxin system higb family toxinMCHL_RS27900Not AvailablePositive1232 - 157612688.0
type ii toxin-antitoxin system higa family antitoxinMCHL_RS27905Not AvailablePositive1580 - 199315389.5
hypothetical proteinMCHL_RS27910Not AvailablePositive2105 - 253616441.6
flagellinMCHL_RS27915Not AvailableNegative2599 - 391845197.6
hypothetical proteinMCHL_RS27925Not AvailableNegative4932 - 543818390.3
hypothetical proteinMCHL_RS27930Not AvailablePositive5776 - 60248349.98
transcriptional regulatorMCHL_RS27940Not AvailableNegative7337 - 841938555.8
helix-turn-helix domain-containing proteinMCHL_RS27950Not AvailableNegative8757 - 903810210.4
hypothetical proteinMCHL_RS27955Not AvailablePositive9143 - 944510625.8

Displaying genes 1 – 10 of 5804 in total

Metabolites

1687 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1687 metabolites

Health Effects

No health effects information available for this bacterium.