Pedobacter duraquae str. DSM 19034

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter duraquae strain DSM 19034 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives optimally at a temperature of 25.0°C. This microbe is characterized by its unique morphology and growth conditions, which suggest an adaptation to specific environmental niches. As a member of the Pedobacter genus, P. duraquae may play a role in various ecological processes, although detailed ecological interactions remain to be elucidated. The Gram-negative cell wall structure of P. duraquae is indicative of its potential resilience to certain environmental stresses, which could be advantageous in its natural habitats. The absence of sporulation suggests that this organism relies on other survival mechanisms, potentially including metabolic versatility or rapid reproductive strategies under favorable conditions. Understanding the physiological traits of P. duraquae may contribute to a broader comprehension of microbial diversity in its habitat. Its optimal growth temperature aligns with mesophilic organisms, which are commonly found in various environments, including soil and aquatic systems. This suggests that P. duraquae may occupy ecological niches where moderate temperatures prevail, possibly impacting nutrient cycling or organic matter decomposition. Overall, the traits of Pedobacter duraquae strain DSM 19034 highlight its potential ecological significance, particularly in environments where temperature stability and nutrient availability are crucial for microbial communities. Further research could uncover its functional roles within these ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter duraquae
StrainDSM 19034

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter duraquae str. DSM 19034
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter duraquae strain DSM 19034 Ga0180971_113, whole genome

Gene Summary

Adenine Count

1553518 bp

Thymine Count

1550797 bp

Guanine Count

1084215 bp

Cytosine Count

1099733 bp

Genome Length

5288263 bp

Protein-coding Genes

4647 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
winged helix family two component transcriptional regulatorCLV32_0259Not AvailableNegative247186 - 24788125970.6
phospho-acceptor domain-containing proteinCLV32_0260Not AvailableNegative247871 - 24932254911.7
outer membrane receptor protein involved in fe transportCLV32_0261Not AvailablePositive249465 - 25163981427.3
hypothetical proteinCLV32_0262Not AvailableNegative251640 - 25211017506.4
dipeptidase dCLV32_0263Not AvailableNegative252183 - 25364052488.8
pap2 superfamily proteinCLV32_0264Not AvailableNegative253721 - 25434123524.6
murein l,d-transpeptidase ycbb/ykudCLV32_0265Not AvailablePositive254484 - 25609461102.7
dha1 family arabinose polymer transporter-like mfs transporterCLV32_0266Not AvailableNegative256091 - 25725440729.4
inner membrane transporter rhtaCLV32_0267Not AvailablePositive257378 - 25824429683.8
hypothetical proteinCLV32_0268Not AvailablePositive258293 - 2585148435.13

Displaying genes 291 – 300 of 4707 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.