Pedobacter duraquae str. DSM 19034

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter duraquae strain DSM 19034 is a Gram-negative, non-spore-forming rod-shaped bacterium that thrives optimally at a temperature of 25.0°C. This microbe is characterized by its unique morphology and growth conditions, which suggest an adaptation to specific environmental niches. As a member of the Pedobacter genus, P. duraquae may play a role in various ecological processes, although detailed ecological interactions remain to be elucidated. The Gram-negative cell wall structure of P. duraquae is indicative of its potential resilience to certain environmental stresses, which could be advantageous in its natural habitats. The absence of sporulation suggests that this organism relies on other survival mechanisms, potentially including metabolic versatility or rapid reproductive strategies under favorable conditions. Understanding the physiological traits of P. duraquae may contribute to a broader comprehension of microbial diversity in its habitat. Its optimal growth temperature aligns with mesophilic organisms, which are commonly found in various environments, including soil and aquatic systems. This suggests that P. duraquae may occupy ecological niches where moderate temperatures prevail, possibly impacting nutrient cycling or organic matter decomposition. Overall, the traits of Pedobacter duraquae strain DSM 19034 highlight its potential ecological significance, particularly in environments where temperature stability and nutrient availability are crucial for microbial communities. Further research could uncover its functional roles within these ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter duraquae
StrainDSM 19034

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter duraquae str. DSM 19034
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter duraquae strain DSM 19034 Ga0180971_113, whole genome

Gene Summary

Adenine Count

1553518 bp

Thymine Count

1550797 bp

Guanine Count

1084215 bp

Cytosine Count

1099733 bp

Genome Length

5288263 bp

Protein-coding Genes

4647 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
histidinol-phosphate aminotransferaseCLV32_1973Not AvailablePositive2246665 - 224771139185.8
imidazoleglycerol-phosphate dehydrataseCLV32_1974Not AvailablePositive2247714 - 224884742427.6
glutamine amidotransferaseCLV32_1975Not AvailablePositive2248847 - 224944021647.0
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomeraseCLV32_1976Not AvailablePositive2249442 - 225019127991.9
cyclaseCLV32_1977Not AvailablePositive2250195 - 225095026907.7
phosphoribosyl-atp pyrophosphatase /phosphoribosyl-amp cyclohydrolaseCLV32_1978Not AvailablePositive2250947 - 225153722144.4
wd-40 repeat-containing proteinCLV32_1979Not AvailablePositive2251543 - 225243933316.8
tonb-dependent susc/raga subfamily outer membrane receptorCLV32_1980Not AvailableNegative2252436 - 2258318221879.0
sh3 domain-containing proteinCLV32_1981Not AvailableNegative2258381 - 225916028989.7
nucleotide-binding universal stress uspa family proteinCLV32_1982Not AvailablePositive2259249 - 225969516137.1

Displaying genes 1991 – 2000 of 4707 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.