Halorubrum lacusprofundi ATCC 49239

RodMotileAerobe

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halorubrum

Description

Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) is a psychrophile isolated from Deep Lake, a hypersaline lake in Antarctica. H. lacusprofundi can grow between 0 and 42 degrees Celsius with optimal growth at 31 degrees Celsius. H. lacusprofundi differs from the already sequenced Halobacterium sp. NRC-1 in that it can grow on a variety of carbon sources including glucose, mannose, acetate, and ethanol, while NRC-1 has a more limited metabolic capacity and has not been shown to use sugars. The other sequenced halophile, Haloarcula marismortui, on the other hand has been shown to use a variety of sugars. H. lacusprofundi, as a psychrophile, provides a contrast to both sequenced halophiles, and comparison of the three will highlight adaptations to low temperature. These results can be compared with those of psychrophilic methanogens to determine whether they use similar mechanisms for cold adaptation. (HAMAP: HALLT)

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalorubrum
SpeciesHalorubrum lacusprofundi
StrainATCC 49239

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Halorubrum lacusprofundi ATCC 49239 chromosome 2, complete

Gene Summary

Adenine Count

110777 bp

Thymine Count

114634 bp

Guanine Count

150478 bp

Cytosine Count

150054 bp

Genome Length

525943 bp

Protein-coding Genes

500 genes

Non-Coding Genes

4 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter permeaseHLAC_RS15920Not AvailablePositive36 - 102535441.7
abc transporter permeaseHLAC_RS15925Not AvailablePositive1022 - 191832350.6
abc transporter atp-binding proteinHLAC_RS15930Not AvailablePositive1915 - 300639481.2
abc transporter atp-binding proteinHLAC_RS15935Not AvailablePositive3003 - 403137883.4
dihydroorotaseHLAC_RS15940Not AvailablePositive4028 - 544050849.3
zn-dependent hydrolaseHLAC_RS15945Not AvailablePositive5437 - 673245609.6
duf3830 family proteinHLAC_RS15950Not AvailablePositive6726 - 714215405.0
d-2-hydroxyacid dehydrogenaseHLAC_RS15955Not AvailablePositive7139 - 805632823.3
fumarylacetoacetate hydrolase family proteinHLAC_RS15960Not AvailableNegative8179 - 890126462.9
helix-turn-helix domain-containing proteinHLAC_RS15965Not AvailableNegative9066 - 1068558785.7

Displaying genes 1 – 10 of 3685 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.