Pedobacter insulae

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter insulae is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of approximately 29.0°C. As a non-spore-forming microbe, it exhibits a consistent morphological structure that is characteristic of its genus. The Gram-negative nature of Pedobacter insulae suggests a complex outer membrane structure, which may contribute to its adaptability in various environments. This species is part of the broader Pedobacter genus, which is known for its role in organic matter degradation and potential involvement in nutrient cycling. The aerobic metabolic pathways employed by Pedobacter insulae allow it to utilize oxygen for energy production, making it a significant player in oxygen-rich environments, such as soil or aquatic systems. Studying Pedobacter insulae could provide insights into the microbial processes that facilitate the breakdown of organic materials, thereby influencing ecosystem dynamics. Its specific temperature preference may also suggest a role in biogeochemical processes in temperate regions during moderate climatic conditions. Understanding the ecological niches occupied by such bacteria could enhance our comprehension of microbial diversity and function in natural habitats.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter insulae
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter insulae
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter insulae strain DSM 18684 genome assembly, contig:

Gene Summary

Adenine Count

1354377 bp

Thymine Count

1356728 bp

Guanine Count

858481 bp

Cytosine Count

818419 bp

Genome Length

4388005 bp

Protein-coding Genes

3774 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
beta-barrel assembly machine subunit bamdSAMN04489864_1061Not AvailablePositive2518123 - 251906136353.1
rna polymerase rpb6SAMN04489864_1062Not AvailablePositive2519061 - 251938712538.7
phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligaseSAMN04489864_1063Not AvailablePositive2519417 - 252061343029.2
protein of unknown functionSAMN04489864_1064Not AvailablePositive2520613 - 252150633857.1
predicted transcriptional regulatorSAMN04489864_1065Not AvailablePositive2521589 - 252196914454.5
signal transducer regulating beta-lactamase production, contains metallopeptidase domainSAMN04489864_1066Not AvailablePositive2521990 - 252380170052.8
dna replication and repair protein recnSAMN04489864_1067Not AvailablePositive2523875 - 252552760818.1
cubico group peptidase, beta-lactamase class c familySAMN04489864_1068Not AvailablePositive2525540 - 252660439990.0
carboxypepd_reg-like domain-containing proteinSAMN04489864_1069Not AvailablePositive2526618 - 252783245941.2
hypothetical proteinSAMN04489864_10610Not AvailableNegative2527835 - 252933456477.7

Displaying genes 2221 – 2230 of 3816 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.