Pedobacter insulae

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter insulae is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of approximately 29.0°C. As a non-spore-forming microbe, it exhibits a consistent morphological structure that is characteristic of its genus. The Gram-negative nature of Pedobacter insulae suggests a complex outer membrane structure, which may contribute to its adaptability in various environments. This species is part of the broader Pedobacter genus, which is known for its role in organic matter degradation and potential involvement in nutrient cycling. The aerobic metabolic pathways employed by Pedobacter insulae allow it to utilize oxygen for energy production, making it a significant player in oxygen-rich environments, such as soil or aquatic systems. Studying Pedobacter insulae could provide insights into the microbial processes that facilitate the breakdown of organic materials, thereby influencing ecosystem dynamics. Its specific temperature preference may also suggest a role in biogeochemical processes in temperate regions during moderate climatic conditions. Understanding the ecological niches occupied by such bacteria could enhance our comprehension of microbial diversity and function in natural habitats.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter insulae
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter insulae
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter insulae strain DSM 18684 genome assembly, contig:

Gene Summary

Adenine Count

1354377 bp

Thymine Count

1356728 bp

Guanine Count

858481 bp

Cytosine Count

818419 bp

Genome Length

4388005 bp

Protein-coding Genes

3774 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aminodeoxyfutalosine synthaseSAMN04489864_104171Not AvailablePositive1910403 - 191158745576.7
probable phosphoglycerate mutaseSAMN04489864_104172Not AvailablePositive1911597 - 191222924412.1
chorismate dehydrataseSAMN04489864_104173Not AvailablePositive1912243 - 191296826835.7
cubico group peptidase, beta-lactamase class c familySAMN04489864_104174Not AvailableNegative1912978 - 191417444717.3
outer membrane receptor proteins, mostly fe transportSAMN04489864_104175Not AvailableNegative1914205 - 191656890106.0
histidine kinaseSAMN04489864_104176Not AvailablePositive1916768 - 191788043120.7
dna-binding response regulator, lytr/algr familySAMN04489864_104177Not AvailablePositive1917852 - 191855927090.3
uncharacterized conserved protein ybjt, contains nad(p)-binding and duf2867 domainsSAMN04489864_104178Not AvailableNegative1918582 - 191946331676.9
dna-binding transcriptional regulator, hxlr familySAMN04489864_104179Not AvailablePositive1919545 - 191990113521.6
dna mismatch repair protein mutsSAMN04489864_104180Not AvailablePositive1920038 - 192261497123.7

Displaying genes 1681 – 1690 of 3816 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.