Pedobacter insulae

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter insulae is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of approximately 29.0°C. As a non-spore-forming microbe, it exhibits a consistent morphological structure that is characteristic of its genus. The Gram-negative nature of Pedobacter insulae suggests a complex outer membrane structure, which may contribute to its adaptability in various environments. This species is part of the broader Pedobacter genus, which is known for its role in organic matter degradation and potential involvement in nutrient cycling. The aerobic metabolic pathways employed by Pedobacter insulae allow it to utilize oxygen for energy production, making it a significant player in oxygen-rich environments, such as soil or aquatic systems. Studying Pedobacter insulae could provide insights into the microbial processes that facilitate the breakdown of organic materials, thereby influencing ecosystem dynamics. Its specific temperature preference may also suggest a role in biogeochemical processes in temperate regions during moderate climatic conditions. Understanding the ecological niches occupied by such bacteria could enhance our comprehension of microbial diversity and function in natural habitats.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter insulae
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter insulae
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter insulae strain DSM 18684 genome assembly, contig:

Gene Summary

Adenine Count

1354377 bp

Thymine Count

1356728 bp

Guanine Count

858481 bp

Cytosine Count

818419 bp

Genome Length

4388005 bp

Protein-coding Genes

3774 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein of unknown functionSAMN04489864_104120Not AvailableNegative1864108 - 186536748879.5
atp-binding cassette, subfamily f, member 3SAMN04489864_104121Not AvailableNegative1865536 - 186747373442.6
dihydroorotate oxidase aSAMN04489864_104122Not AvailablePositive1867534 - 186856238345.5
uncharacterized conserved protein ydhg, yjbr/cyay-like superfamily, duf1801 familySAMN04489864_104123Not AvailableNegative1868578 - 186894913916.8
uncharacterized conserved protein yndb, ahsa1/start domainSAMN04489864_104124Not AvailableNegative1868998 - 186943216790.8
dna-binding transcriptional regulator, arsr familySAMN04489864_104125Not AvailableNegative1869440 - 186976612592.3
hypothetical proteinSAMN04489864_104126Not AvailableNegative1870162 - 18703386459.89
Trna-cysNot AvailableNot AvailablePositive1870378 - 1870448Not Available
rna methyltransferase, trmh familySAMN04489864_104128Not AvailableNegative1870536 - 187116222885.9
outer membrane protein assembly factor bamaSAMN04489864_104129Not AvailablePositive1871279 - 187371193305.8

Displaying genes 1631 – 1640 of 3816 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.