Pedobacter terrae

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter terrae is a Gram-negative, non-spore-forming rod-shaped bacterium that optimally thrives at a temperature of 25.0°C. This microbe belongs to the genus Pedobacter, which is known for its diverse metabolic capabilities and adaptability to various environmental conditions. The rod shape of P. terrae is characteristic of many members within its taxonomic group, which often play significant roles in soil microbiomes and organic matter degradation. As a non-spore-forming organism, Pedobacter terrae relies on vegetative growth for reproduction and survival in its environment. Its Gram-negative cell wall structure is indicative of a thin peptidoglycan layer surrounded by an outer membrane, which may provide it with resistance to certain antibiotics and environmental stresses. The optimal growth temperature of 25.0°C suggests that P. terrae is well-adapted to temperate environments, potentially making it an important player in soil ecosystems where moderate temperatures prevail. Although specific ecological roles remain to be fully elucidated, the traits of P. terrae imply that it may contribute to nutrient cycling and organic matter decomposition, processes crucial for maintaining soil health and fertility. The metabolic versatility often observed in Pedobacter species highlights their potential significance in biogeochemical cycles, particularly in the breakdown of complex organic compounds in soil habitats.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter terrae
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter terrae
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter terrae strain DSM 17933 genome assembly, contig:

Gene Summary

Adenine Count

1757318 bp

Thymine Count

1765928 bp

Guanine Count

1120783 bp

Cytosine Count

1109922 bp

Genome Length

5755101 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
metallo-beta-lactamase class bSAMN05421827_101576Not AvailableNegative625443 - 62630632282.3
cubico group peptidase, beta-lactamase class c familySAMN05421827_101577Not AvailableNegative626331 - 62750944508.1
hypothetical proteinSAMN05421827_101578Not AvailableNegative627622 - 62841328774.6
hypothetical proteinSAMN05421827_101579Not AvailableNegative628438 - 62906724511.7
hypothetical proteinSAMN05421827_101580Not AvailableNegative629081 - 62974924253.9
histidine kinase-, dna gyrase b-, and hsp90-like atpaseSAMN05421827_101581Not AvailablePositive629888 - 63189176584.2
dna-binding response regulator, narl/fixj family, contains rec and hth domainsSAMN05421827_101582Not AvailablePositive631884 - 63251323347.4
hypothetical proteinSAMN05421827_101583Not AvailablePositive632543 - 63307920623.2
uncharacterized conserved protein ybjt, contains nad(p)-binding and duf2867 domainsSAMN05421827_101584Not AvailableNegative633139 - 63411636402.0
dna-binding transcriptional regulator, hxlr familySAMN05421827_101585Not AvailablePositive634213 - 63459614233.6

Displaying genes 561 – 570 of 5014 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.