Pedobacter terrae

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter terrae is a Gram-negative, non-spore-forming rod-shaped bacterium that optimally thrives at a temperature of 25.0°C. This microbe belongs to the genus Pedobacter, which is known for its diverse metabolic capabilities and adaptability to various environmental conditions. The rod shape of P. terrae is characteristic of many members within its taxonomic group, which often play significant roles in soil microbiomes and organic matter degradation. As a non-spore-forming organism, Pedobacter terrae relies on vegetative growth for reproduction and survival in its environment. Its Gram-negative cell wall structure is indicative of a thin peptidoglycan layer surrounded by an outer membrane, which may provide it with resistance to certain antibiotics and environmental stresses. The optimal growth temperature of 25.0°C suggests that P. terrae is well-adapted to temperate environments, potentially making it an important player in soil ecosystems where moderate temperatures prevail. Although specific ecological roles remain to be fully elucidated, the traits of P. terrae imply that it may contribute to nutrient cycling and organic matter decomposition, processes crucial for maintaining soil health and fertility. The metabolic versatility often observed in Pedobacter species highlights their potential significance in biogeochemical cycles, particularly in the breakdown of complex organic compounds in soil habitats.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter terrae
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter terrae
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter terrae strain DSM 17933 genome assembly, contig:

Gene Summary

Adenine Count

1757318 bp

Thymine Count

1765928 bp

Guanine Count

1120783 bp

Cytosine Count

1109922 bp

Genome Length

5755101 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
seryl-trna synthetaseSAMN05421827_11744Not AvailableNegative4321790 - 432306147647.8
16s rrna (cytidine1402-2'-o)-methyltransferaseSAMN05421827_11745Not AvailablePositive4323159 - 432387226539.0
short c-terminal domain-containing proteinSAMN05421827_11746Not AvailablePositive4323911 - 432456424901.9
apolipoprotein n-acyltransferaseSAMN05421827_11747Not AvailablePositive4324986 - 432661461280.3
uncharacterized damage-inducible protein dinb (forms a four-helix bundle)SAMN05421827_11748Not AvailablePositive4326607 - 432706817814.2
signal peptidase iiSAMN05421827_11749Not AvailablePositive4327073 - 432757919262.0
dual-action heigh metallo-peptidaseSAMN05421827_11750Not AvailablePositive4327709 - 432845826916.9
hypothetical proteinSAMN05421827_11751Not AvailablePositive4328494 - 43285893832.81
osmotically inducible protein osmcSAMN05421827_11752Not AvailablePositive4328663 - 432907914755.2
nad+ synthase (glutamine-hydrolysing)SAMN05421827_11753Not AvailableNegative4329205 - 433084561112.0

Displaying genes 3771 – 3780 of 5014 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.