Pedobacter terrae

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter terrae is a Gram-negative, non-spore-forming rod-shaped bacterium that optimally thrives at a temperature of 25.0°C. This microbe belongs to the genus Pedobacter, which is known for its diverse metabolic capabilities and adaptability to various environmental conditions. The rod shape of P. terrae is characteristic of many members within its taxonomic group, which often play significant roles in soil microbiomes and organic matter degradation. As a non-spore-forming organism, Pedobacter terrae relies on vegetative growth for reproduction and survival in its environment. Its Gram-negative cell wall structure is indicative of a thin peptidoglycan layer surrounded by an outer membrane, which may provide it with resistance to certain antibiotics and environmental stresses. The optimal growth temperature of 25.0°C suggests that P. terrae is well-adapted to temperate environments, potentially making it an important player in soil ecosystems where moderate temperatures prevail. Although specific ecological roles remain to be fully elucidated, the traits of P. terrae imply that it may contribute to nutrient cycling and organic matter decomposition, processes crucial for maintaining soil health and fertility. The metabolic versatility often observed in Pedobacter species highlights their potential significance in biogeochemical cycles, particularly in the breakdown of complex organic compounds in soil habitats.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter terrae
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Pedobacter terrae
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter terrae strain DSM 17933 genome assembly, contig:

Gene Summary

Adenine Count

1757318 bp

Thymine Count

1765928 bp

Guanine Count

1120783 bp

Cytosine Count

1109922 bp

Genome Length

5755101 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
two-component system, ompr family, phosphate regulon sensor histidine kinase phorSAMN05421827_112126Not AvailablePositive3710289 - 371210969157.7
dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domainSAMN05421827_112127Not AvailablePositive3712225 - 371295628015.2
1,4-dihydroxy-6-naphthoate synthaseSAMN05421827_112128Not AvailableNegative3713065 - 371391331596.1
futalosine hydrolaseSAMN05421827_112129Not AvailableNegative3714032 - 371465522672.1
6-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthaseSAMN05421827_112130Not AvailablePositive3714761 - 371517115813.7
gtp cyclohydrolase iSAMN05421827_112131Not AvailablePositive3715184 - 371581923900.9
[acyl-carrier-protein] s-malonyltransferaseSAMN05421827_112132Not AvailablePositive3715901 - 371678230933.4
hamp domain-containing proteinSAMN05421827_112133Not AvailablePositive3716870 - 3720601141893.0
hypothetical proteinSAMN05421827_112134Not AvailableNegative3720644 - 372154634226.9
uncharacterized lipoprotein yddw, upf0748 familySAMN05421827_112135Not AvailablePositive3721752 - 372329658862.8

Displaying genes 3231 – 3240 of 5014 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.