Chitinophaga ginsengisegetis

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga ginsengisegetis is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and does not form spores. This microbe thrives optimally at a temperature of 25.0°C, indicating a preference for moderate environmental conditions. As a member of the Chitinophaga genus, it is likely involved in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. The non-spore-forming nature of Chitinophaga ginsengisegetis suggests that it may rely on its aerobic capabilities to survive and compete in its ecological niche, potentially affecting organic matter decomposition and nutrient cycling within its habitat. Furthermore, its Gram-negative cell wall structure may confer specific advantages in terms of environmental adaptability and resistance to certain antimicrobial agents, although the implications of this trait require further investigation. Given its optimal growth temperature of 25.0°C, Chitinophaga ginsengisegetis may inhabit temperate environments where such conditions are prevalent. This bacterium could play a significant role in the microbiome of soil or decaying organic matter, contributing to the breakdown of complex organic materials. Understanding its ecological role may provide insights into the broader implications of chitinolytic bacteria in nutrient dynamics within ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga ginsengisegetis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga ginsengisegetis strain DSM 18108 genome assembly,

Gene Summary

Adenine Count

2112075 bp

Thymine Count

2120842 bp

Guanine Count

1815377 bp

Cytosine Count

1885384 bp

Genome Length

7934943 bp

Protein-coding Genes

6301 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hemolysin, contains cbs domainsSAMN05660461_0400Not AvailableNegative559163 - 56045247904.6
uncharacterized membrane protein yfcaSAMN05660461_0401Not AvailablePositive560663 - 56162234179.7
ob fold (bof) proteinSAMN05660461_0402Not AvailableNegative561632 - 56194612051.7
na+/h+-dicarboxylate symporterSAMN05660461_0403Not AvailablePositive562058 - 56326942808.6
cystathionine beta-lyaseSAMN05660461_0404Not AvailableNegative563226 - 56439841822.3
nucleoside-diphosphate-sugar epimeraseSAMN05660461_0405Not AvailableNegative564734 - 56568134779.9
uncharacterized sam-binding protein ycdf, duf218 familySAMN05660461_0406Not AvailableNegative565736 - 56696845934.6
his kinase a (phospho-acceptor) domain-containing proteinSAMN05660461_0407Not AvailablePositive567319 - 56938277350.2
protein of unknown functionSAMN05660461_0408Not AvailablePositive569391 - 57008326069.5
hypothetical proteinSAMN05660461_0409Not AvailableNegative570102 - 5703177797.29

Displaying genes 411 – 420 of 6376 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.