Chitinophaga rupis

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga rupis is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics. This organism belongs to the phylum Bacteroidetes and is notable for its ability to thrive in oxygen-rich environments. The Gram-negative nature of C. rupis indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical for this group of bacteria and may confer specific advantages in its ecological niche. The rod shape of C. rupis is a common morphology among many bacteria, which can influence its motility and interaction with its environment. As an aerobic microbe, C. rupis relies on oxygen for its metabolic processes, which may play a critical role in its ecological adaptations. This trait suggests that C. rupis may be involved in specific biogeochemical cycles where oxygen availability is a determining factor. Interestingly, the presence of C. rupis in various environments may indicate its role in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and in fungal cell walls. This ability to degrade chitin could have significant implications for nutrient cycling in ecosystems, particularly in soil and marine environments where chitinous materials are abundant. Thus, C. rupis may contribute to the decomposition of organic matter and the recycling of nutrients in its habitat, highlighting its ecological significance in maintaining ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga rupis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga rupis

Accession NumberFOBB00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

6501 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
16s ribosomal rna . bacterial ssuNot AvailableNot Available+3 - 20318.01
23s ribosomal rna . bacterial lsuNot AvailableNot Available+7 - 121718.01
16s ribosomal rna . bacterial ssuNot AvailableNot Available+85 - 161318.01
5s ribosomal rna . bacterial tsuNot AvailableNot Available+209 - 32018.01
transposase and inactivated derivativesSAMN04488505_1011Not Available-1 - 28810696.8
acyltransferase family proteinSAMN04488505_1012Not Available+424 - 125431823.7
2,4-dienoyl-coa reductaseSAMN04488505_1013Not Available-1219 - 234640804.1
camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinasesSAMN04488505_1014Not Available-2427 - 301723042.9
por secretion system c-terminal sorting domain-containing proteinSAMN04488505_1015Not Available-3030 - 5837101178.0
kup system potassium uptake proteinSAMN04488505_1016Not Available-6235 - 819073565.8

Displaying genes 1 – 10 of 6565 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites