Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia soli |
| Strain | GP25-8 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Nicotiana tabacum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1132447 bp
Thymine Count
1126675 bp
Guanine Count
1902158 bp
Cytosine Count
1934929 bp
Genome Length
6096209 bp
Protein-coding Genes
5327 genes
Non-Coding Genes
96 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv secretion protein dotu | C0Z19_18115 | Not Available | Negative | 4000108 - 4001331 | 43336.1 |
| type vi secretion system baseplate subunit tssk | C0Z19_18120 | Not Available | Negative | 4001313 - 4002701 | 51222.0 |
| type vi secretion system tip protein vgrg | C0Z19_18125 | Not Available | Negative | 4002795 - 4004789 | 72230.6 |
| duf4280 domain-containing protein | C0Z19_18130 | Not Available | Negative | 4004813 - 4005202 | 12744.7 |
| type vi secretion system atpase tssh | C0Z19_18135 | Not Available | Negative | 4005217 - 4007895 | 96726.9 |
| type vi secretion system baseplate subunit tssg | C0Z19_18140 | Not Available | Negative | 4007840 - 4008925 | 40035.3 |
| type vi secretion system baseplate subunit tssf | C0Z19_18145 | Not Available | Negative | 4008910 - 4010811 | 69846.8 |
| type vi secretion system baseplate subunit tsse | C0Z19_18150 | Not Available | Negative | 4010808 - 4011335 | 19220.1 |
| hcp1 family type vi secretion system effector | C0Z19_18155 | Not Available | Negative | 4011412 - 4011894 | 17289.6 |
| type vi secretion system contractile sheath large subunit | C0Z19_18160 | Not Available | Negative | 4011942 - 4013459 | 55775.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
