Sinorhizobium medicae WSM419

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Sinorhizobium

Description

Sinorhizobium medicae WSM419, originally known as Rhizobium meliloti WSM419, is an acid-tolerant strain originally isolated from acidic soil in Sardinia. It is a motile, non-spore-forming, rod-shaped bacteria. It nodulates Medicago spp., is used to inoculate these plants commercially, and is thus studied for its acid-tolerance. It was placed in a new taxon based on phenotypic and phylogenetic studies of the 16S gene. It has one chromosome and three plasmids. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusSinorhizobium
SpeciesSinorhizobium medicae
StrainWSM419

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Sinorhizobium medicae WSM419
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence.

Gene Summary

Adenine Count

301801 bp

Thymine Count

303712 bp

Guanine Count

482701 bp

Cytosine Count

482737 bp

Genome Length

1570951 bp

Protein-coding Genes

1462 genes

Non-Coding Genes

1 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf1013 domain-containing proteinSMED_RS16025Not AvailablePositive3367525 - 336822325792.5
amp-binding proteinSMED_RS16030Not AvailableNegative3368314 - 337022168897.4
yggs family pyridoxal phosphate-dependent enzymeSMED_RS16035Not AvailableNegative3370334 - 337099323667.4
leucine--trna ligaseSMED_RS16040Not AvailablePositive3371250 - 337388098097.3
lps assembly lipoprotein lpteSMED_RS16045Not AvailablePositive3373867 - 337441219093.3
dna polymerase iii subunit deltaSMED_RS16050Not AvailablePositive3374425 - 337545637226.0
parb/repb/spo0j family partition proteinSMED_RS16055Not AvailableNegative3375491 - 337638132842.0
para family proteinSMED_RS16060Not AvailableNegative3376414 - 337720828701.9
16s rrna (guanine(527)-n(7))-methyltransferase rsmgSMED_RS16065Not AvailableNegative3377223 - 337786423782.5
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgSMED_RS16070Not AvailableNegative3377873 - 337974467958.2

Displaying genes 4711 – 4720 of 6537 in total

Metabolites

1985 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da

Displaying 1–10 of 1985 metabolites

Health Effects

No health effects information available for this bacterium.