Sinorhizobium medicae WSM419

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Sinorhizobium

Description

Sinorhizobium medicae WSM419, originally known as Rhizobium meliloti WSM419, is an acid-tolerant strain originally isolated from acidic soil in Sardinia. It is a motile, non-spore-forming, rod-shaped bacteria. It nodulates Medicago spp., is used to inoculate these plants commercially, and is thus studied for its acid-tolerance. It was placed in a new taxon based on phenotypic and phylogenetic studies of the 16S gene. It has one chromosome and three plasmids. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusSinorhizobium
SpeciesSinorhizobium medicae
StrainWSM419

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Sinorhizobium medicae WSM419
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature28
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Sinorhizobium medicae WSM419 plasmid pSMED03, complete sequence.

Gene Summary

Adenine Count

44518 bp

Thymine Count

43086 bp

Guanine Count

64579 bp

Cytosine Count

67130 bp

Genome Length

219313 bp

Protein-coding Genes

181 genes

Non-Coding Genes

14 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ti-type conjugative transfer relaxase traaSMED_RS17955Not AvailablePositive197 - 3505122499.0
duf736 family proteinSMED_RS32630Not AvailableNegative3655 - 38738270.0
duf736 family proteinSMED_RS17960Not AvailablePositive4121 - 446211990.8
yban family proteinSMED_RS17965Not AvailablePositive4501 - 487813607.2
hypothetical proteinSMED_RS33270Not AvailableNegative5022 - 51534466.54
abc transporter substrate-binding proteinSMED_RS17970Not AvailableNegative5353 - 663946018.8
laci family dna-binding transcriptional regulatorSMED_RS17975Not AvailablePositive6785 - 781936646.0
duf2264 domain-containing proteinSMED_RS17980Not AvailablePositive7809 - 966268830.3
hydroxyacid dehydrogenaseSMED_RS17985Not AvailablePositive9659 - 1066636630.9
sugar phosphate isomerase/epimerase family proteinSMED_RS17990Not AvailablePositive10663 - 1147229339.6

Displaying genes 1 – 10 of 6537 in total

Metabolites

1722 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 1722 metabolites

Health Effects

No health effects information available for this bacterium.