Flavobacterium aquidurense str. RC62

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium aquidurense
StrainRC62

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium aquidurense str. RC62
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium aquidurense strain RC62 contig16, whole genome

Gene Summary

Adenine Count

1764017 bp

Thymine Count

1795141 bp

Guanine Count

871457 bp

Cytosine Count

919068 bp

Genome Length

5349683 bp

Protein-coding Genes

4593 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative hydrolase or acyltransferase (alpha/beta hydrolase superfamily)RC62_123Not AvailableNegative145688 - 14647629839.8
sigma54 specific transcriptional regulator, fis familyRC62_124P19323Negative146711 - 14866073460.9
signal transduction histidine kinaseRC62_125Not AvailableNegative148673 - 15028361675.4
arac family transcriptional regulatorRC62_126Not AvailableNegative150510 - 15144235286.1
short-chain dehydrogenase/reductase sdrRC62_127Not AvailableNegative151519 - 15235831004.8
dual-action heigh metallo-peptidaseRC62_128Not AvailableNegative152759 - 15358929145.2
por secretion system c-terminal sorting domain-containing proteinRC62_129Not AvailablePositive154120 - 156804100260.0
hypothetical proteinRC62_130Not AvailableNegative156926 - 1571719713.67
Large subunit ribosomal rnaNot AvailableNot AvailablePositive157541 - 160259Not Available
Trna-alaNot AvailableNot AvailablePositive160425 - 160498Not Available

Displaying genes 131 – 140 of 4666 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

189 records
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Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 189 metabolites

Health Effects

No health effects information available for this bacterium.