Escherichia coli 53638

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli 53638 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, allowing it to thrive in both oxygen-rich and oxygen-poor environments. E. coli 53638 demonstrates optimal growth at a temperature of 37.0°C, which corresponds to the average body temperature of warm-blooded hosts. This strain's habitat is primarily host-associated, indicating its prevalence in biological systems, particularly within the intestines of mammals. The ability to adapt to varying oxygen levels suggests that E. coli 53638 could play a versatile role in the microbial ecosystem, potentially contributing to processes such as fermentation and nutrient cycling within its host. Moreover, the specific pairing and single-cell arrangement may influence its interactions with other microbial species and its host, possibly affecting its ecological niche or its role in symbiotic relationships. Understanding the growth conditions and cellular arrangement of E. coli 53638 can provide insights into its functional capacities and interactions within the microbiome, illuminating its potential contributions to host health and microbial community dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strain53638

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli 53638
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli 53638 plasmid p53638_75, complete sequence.

Gene Summary

Adenine Count

18496 bp

Thymine Count

17922 bp

Guanine Count

20544 bp

Cytosine Count

18127 bp

Genome Length

75089 bp

Protein-coding Genes

96 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iv conjugative transfer system coupling protein tradEC53638_RS27240Not AvailablePositive121 - 236485185.6
type ii toxin-antitoxin system trna(fmet)-specific endonuclease vapcEC53638_RS27245Not AvailableNegative2373 - 277114846.0
toxin-antitoxin system antitoxin vapbEC53638_RS27250Not AvailableNegative2771 - 29988536.05
conjugative transfer relaxase/helicase traiEC53638_RS27255Not AvailablePositive3080 - 8350191772.0
conjugal transfer pilus acetylase traxEC53638_RS27260Not AvailablePositive8370 - 911627287.6
fertility inhibition protein finoEC53638_RS27265Not AvailablePositive9171 - 973120988.6
anr family transcriptional regulatorEC53638_RS27270Not AvailablePositive9866 - 100788229.74
thermonuclease family proteinEC53638_RS27275Not AvailablePositive10323 - 1078417809.6
hypothetical proteinEC53638_RS27280Not AvailablePositive10830 - 109283977.83
is1 family transposaseEC53638_RS27295Not AvailablePositive10983 - 1168026631.4

Displaying genes 1 – 10 of 377 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.