Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas simiae |
| Strain | WCS417 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | rhizosphere; rhizosphere of wheat |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Arabidopsis, Brachypodium distachyon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1222714 bp
Thymine Count
1224473 bp
Guanine Count
1858679 bp
Cytosine Count
1862205 bp
Genome Length
6169071 bp
Protein-coding Genes
5543 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rnase adapter rapz | PS417_RS23455 | Not Available | Negative | 969341 - 970198 | 32102.6 |
| pts iia-like nitrogen regulatory protein ptsn | PS417_RS23450 | Not Available | Negative | 970201 - 970665 | 16795.4 |
| ribosome hibernation-promoting factor, hpf/yfia family | PS417_RS23445 | Not Available | Negative | 970676 - 970981 | 11554.0 |
| rna polymerase factor sigma-54 | PS417_RS23440 | Not Available | Negative | 971057 - 972550 | 56617.9 |
| lps export abc transporter atp-binding protein | PS417_RS23435 | Not Available | Negative | 972736 - 973461 | 26539.2 |
| lipopolysaccharide transport periplasmic protein lpta | PS417_RS23430 | Not Available | Negative | 973461 - 973994 | 18805.5 |
| lps export abc transporter periplasmic protein lptc | PS417_RS23425 | Not Available | Negative | 973981 - 974553 | 21320.3 |
| kdsc family phosphatase | PS417_RS23420 | Not Available | Negative | 974562 - 975086 | 18897.8 |
| kpsf/gutq family sugar-phosphate isomerase | PS417_RS23415 | Not Available | Negative | 975087 - 976061 | 34321.9 |
| atp-binding cassette domain-containing protein | PS417_RS23410 | Not Available | Positive | 976360 - 977169 | 29422.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
