Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas simiae |
| Strain | WCS417 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | rhizosphere; rhizosphere of wheat |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Arabidopsis, Brachypodium distachyon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1222714 bp
Thymine Count
1224473 bp
Guanine Count
1858679 bp
Cytosine Count
1862205 bp
Genome Length
6169071 bp
Protein-coding Genes
5543 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna helicase ii | PS417_RS24375 | Not Available | Positive | 777122 - 777521 | 13981.7 |
| flavin reductase family protein | PS417_RS24370 | Not Available | Positive | 777576 - 778163 | 21320.3 |
| arac family transcriptional regulator | PS417_RS24365 | Not Available | Negative | 778338 - 779159 | 30906.8 |
| lyse family transporter | PS417_RS24360 | Not Available | Positive | 779301 - 779939 | 22750.2 |
| d-alanine--d-alanine ligase | PS417_RS24355 | Not Available | Positive | 779984 - 781078 | 39092.8 |
| peptidoglycan editing factor pgef | PS417_RS24350 | Not Available | Negative | 781068 - 781793 | 25999.9 |
| gamma-glutamyltransferase | PS417_RS24345 | Not Available | Negative | 781819 - 783648 | 63749.7 |
| phzf family phenazine biosynthesis protein | PS417_RS24340 | Not Available | Negative | 783685 - 784464 | 28441.8 |
| avre-family type 3 secretion system effector | PS417_RS24335 | Not Available | Positive | 784645 - 788943 | 153561.0 |
| isopentenyl-diphosphate delta-isomerase | PS417_RS27725 | Not Available | Negative | 788946 - 789488 | 19982.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
