Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas simiae |
| Strain | WCS417 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | rhizosphere; rhizosphere of wheat |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Arabidopsis, Brachypodium distachyon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1222714 bp
Thymine Count
1224473 bp
Guanine Count
1858679 bp
Cytosine Count
1862205 bp
Genome Length
6169071 bp
Protein-coding Genes
5543 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide heptosyltransferase ii | PS417_RS25515 | Not Available | Positive | 508350 - 509384 | 38314.6 |
| lipopolysaccharide heptosyltransferase i | PS417_RS25510 | Not Available | Positive | 509386 - 510447 | 39286.8 |
| glycosyltransferase family 4 protein | PS417_RS25505 | Not Available | Positive | 510447 - 511571 | 42245.9 |
| lipopolysaccharide core heptose(i) kinase rfap | PS417_RS25500 | Not Available | Positive | 511568 - 512374 | 30272.1 |
| lipopolysaccharide kinase inaa family protein | PS417_RS25495 | Not Available | Positive | 512374 - 513108 | 28718.4 |
| lipopolysaccharide kinase inaa family protein | PS417_RS25490 | Not Available | Positive | 513105 - 513857 | 28847.3 |
| lipopolysaccharide kinase inaa family protein | PS417_RS25485 | Not Available | Positive | 513857 - 515296 | 53924.1 |
| tonb-dependent receptor family protein | PS417_RS25480 | Not Available | Negative | 515415 - 517499 | 75954.1 |
| ycek/yidq family lipoprotein | PS417_RS28410 | Not Available | Positive | 517706 - 518041 | 11892.5 |
| carbamoyltransferase | PS417_RS25475 | Not Available | Positive | 518175 - 519932 | 65622.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
