Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas simiae |
| Strain | WCS417 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | rhizosphere; rhizosphere of wheat |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Arabidopsis, Brachypodium distachyon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1222714 bp
Thymine Count
1224473 bp
Guanine Count
1858679 bp
Cytosine Count
1862205 bp
Genome Length
6169071 bp
Protein-coding Genes
5543 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucose-1-phosphate thymidylyltransferase rfba | PS417_RS26400 | Not Available | Negative | 286869 - 287744 | 32309.6 |
| dtdp-glucose 4,6-dehydratase | PS417_RS26395 | Not Available | Negative | 287741 - 288823 | 40281.5 |
| aminotransferase | PS417_RS26390 | Not Available | Positive | 288975 - 291875 | 105836.0 |
| agmatine deiminase | PS417_RS26385 | Not Available | Positive | 291997 - 293103 | 40631.6 |
| hypothetical protein | PS417_RS26380 | Not Available | Positive | 293337 - 293555 | 8375.07 |
| tonb-dependent receptor | PS417_RS26375 | Not Available | Negative | 293594 - 295681 | 77119.9 |
| oprd family porin | PS417_RS26370 | Not Available | Positive | 296093 - 297409 | 47627.4 |
| tautomerase family protein | PS417_RS26365 | Not Available | Positive | 297612 - 297815 | 7693.06 |
| sdr family nad(p)-dependent oxidoreductase | PS417_RS26360 | Not Available | Positive | 297836 - 298537 | 24441.2 |
| m48 family metallopeptidase | PS417_RS26355 | Not Available | Negative | 298541 - 300118 | 58354.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
