Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas simiae |
| Strain | WCS417 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | rhizosphere; rhizosphere of wheat |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Arabidopsis, Brachypodium distachyon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1222714 bp
Thymine Count
1224473 bp
Guanine Count
1858679 bp
Cytosine Count
1862205 bp
Genome Length
6169071 bp
Protein-coding Genes
5543 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c oxidase assembly protein | PS417_RS27380 | Not Available | Positive | 61900 - 62451 | 20332.8 |
| cytochrome c oxidase subunit 3 | PS417_RS27375 | Not Available | Positive | 62487 - 63374 | 33383.0 |
| twin transmembrane helix small protein | PS417_RS27370 | Not Available | Negative | 63381 - 63584 | 7161.04 |
| surf1 family protein | PS417_RS27365 | Not Available | Positive | 63613 - 64377 | 28421.2 |
| hypothetical protein | PS417_RS27360 | Not Available | Positive | 64343 - 64927 | 21586.2 |
| cox15/ctaa family protein | PS417_RS27355 | Not Available | Positive | 64938 - 66017 | 38981.5 |
| heme o synthase | PS417_RS27350 | Not Available | Positive | 66005 - 66904 | 32618.2 |
| sco family protein | PS417_RS27345 | Not Available | Positive | 66901 - 67536 | 23005.2 |
| metq/nlpa family abc transporter substrate-binding protein | PS417_RS27340 | Not Available | Negative | 67698 - 68468 | 27939.7 |
| methionine abc transporter permease | PS417_RS27335 | Not Available | Negative | 68520 - 69194 | 24160.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
