Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas simiae |
| Strain | WCS417 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | rhizosphere; rhizosphere of wheat |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Arabidopsis, Brachypodium distachyon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1222714 bp
Thymine Count
1224473 bp
Guanine Count
1858679 bp
Cytosine Count
1862205 bp
Genome Length
6169071 bp
Protein-coding Genes
5543 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-dehydro-3-deoxy-6-phosphogalactonate aldolase | PS417_RS27530 | Not Available | Positive | 33938 - 34558 | 21325.1 |
| galactonate dehydratase | PS417_RS27525 | Not Available | Positive | 34607 - 35755 | 42159.4 |
| mfs transporter | PS417_RS27520 | Not Available | Positive | 35939 - 37246 | 47217.5 |
| anti-virulence regulator cigr family protein | PS417_RS27515 | Not Available | Negative | 37312 - 37752 | 15828.9 |
| tryptophan synthase subunit alpha | PS417_RS27510 | Not Available | Negative | 37889 - 38698 | 28585.3 |
| tryptophan synthase subunit beta | PS417_RS27505 | Not Available | Negative | 38698 - 39939 | 45084.0 |
| lysr family transcriptional regulator | PS417_RS27500 | Not Available | Positive | 40050 - 40946 | 32298.8 |
| duf883 family protein | PS417_RS27495 | Not Available | Negative | 40956 - 41282 | 11762.9 |
| dodecin | PS417_RS27490 | Not Available | Positive | 41439 - 41654 | 7868.24 |
| duf1161 domain-containing protein | PS417_RS27485 | Not Available | Positive | 41770 - 41997 | 7608.23 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
