Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas simiae |
| Strain | WCS417 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | rhizosphere; rhizosphere of wheat |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Arabidopsis, Brachypodium distachyon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1222714 bp
Thymine Count
1224473 bp
Guanine Count
1858679 bp
Cytosine Count
1862205 bp
Genome Length
6169071 bp
Protein-coding Genes
5543 genes
Non-Coding Genes
152 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chromosomal replication initiator protein dnaa | PS417_RS27675 | Not Available | Positive | 225 - 1742 | 56596.6 |
| dna polymerase iii subunit beta | PS417_RS27670 | Not Available | Positive | 1781 - 2884 | 40545.9 |
| dna replication/repair protein recf | PS417_RS27665 | Not Available | Positive | 2905 - 4008 | 41528.8 |
| dna topoisomerase (atp-hydrolyzing) subunit b | PS417_RS27660 | Not Available | Positive | 4013 - 6430 | 90387.6 |
| response regulator transcription factor | PS417_RS27655 | Not Available | Negative | 6537 - 7259 | 27760.0 |
| fecr domain-containing protein | PS417_RS27650 | Not Available | Positive | 7575 - 8432 | 31407.8 |
| chase2 domain-containing protein | PS417_RS27645 | Not Available | Positive | 8436 - 10715 | 83944.9 |
| lysophospholipid acyltransferase family protein | PS417_RS27640 | Not Available | Negative | 10898 - 11668 | 28854.4 |
| d-glycero-beta-d-manno-heptose 1,7-bisphosphate 7-phosphatase | PS417_RS27635 | Not Available | Negative | 11751 - 12287 | 18990.9 |
| glycine--trna ligase subunit beta | PS417_RS27630 | Not Available | Negative | 12290 - 14344 | 74931.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
