Phocaeicola coprocola

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Methylotenera mobilis is a gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, categorizing it as a chemoheterotroph, and can be found in various body sites across different species, including the human gut, soil, and aquatic environments, and is an obligate aerobe. As a gram-negative microbe, Methylotenera mobilis has a unique outer membrane composed of lipopolysaccharides, which provides it with a protective barrier against its environment. Its rod-shaped morphology allows it to maintain a large surface area, facilitating the uptake of nutrients and interaction with its surroundings. The mesophilic temperature preference of Methylotenera mobilis enables it to grow optimally in temperatures ranging from 20-45°C, making it well-suited for a wide range of environments. As a chemoheterotroph, Methylotenera mobilis relies on organic compounds for energy and carbon, utilizing a variety of substrates, including methanol and other one-carbon compounds. This versatility in substrate utilization allows it to thrive in diverse environments, from soil and aquatic ecosystems to the human gut. The presence of Methylotenera mobilis in various body sites across different species highlights its ability to adapt and survive in different niches. As an obligate aerobe, Methylotenera mobilis requires oxygen to grow, which is essential for its energy-producing metabolic processes. Methylotenera mobilis has been found to play a significant role in the biodegradation of methanol and other pollutants, making it a valuable tool in bioremediation efforts. Its ability to utilize one-carbon compounds also makes it a key player in the global carbon cycle, contributing to the breakdown and recycling of organic matter.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola coprocola
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola coprocola

Accession NumberQRUU00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
is982 family transposaseDWY20_00005Not Available-25 - 93635558.6
hypothetical proteinDWY20_00010Not Available+1201 - 14439558.84
duf4491 family proteinDWY20_00015Not Available-1658 - 17804709.96
hypothetical proteinDWY20_00020Not Available+2016 - 361162263.2
tonb-dependent receptorDWY20_00025Not Available+3826 - 6855111277.0
ragb/susd family nutrient uptake outer membrane proteinDWY20_00030Not Available+6874 - 842457358.5
susf/suse family outer membrane proteinDWY20_00035Not Available+8444 - 996156730.4
cycloisomaltooligosaccharide glucanotransferaseDWY20_00040Not Available+9982 - 1178167871.9
glycoside hydrolase family 97 proteinDWY20_00045Not Available+11796 - 1395281878.5
glycoside hydrolase family 31 proteinDWY20_00050Not Available+14136 - 1662295229.6

Displaying genes 1 – 10 of 2859 in total

Pathways

173 pathways

Metabolites

471 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da

Displaying 1–10 of 471 metabolites