Phocaeicola coprocola

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Methylotenera mobilis is a gram-negative, rod-shaped microbe that thrives in mesophilic temperatures, categorizing it as a chemoheterotroph, and can be found in various body sites across different species, including the human gut, soil, and aquatic environments, and is an obligate aerobe. As a gram-negative microbe, Methylotenera mobilis has a unique outer membrane composed of lipopolysaccharides, which provides it with a protective barrier against its environment. Its rod-shaped morphology allows it to maintain a large surface area, facilitating the uptake of nutrients and interaction with its surroundings. The mesophilic temperature preference of Methylotenera mobilis enables it to grow optimally in temperatures ranging from 20-45°C, making it well-suited for a wide range of environments. As a chemoheterotroph, Methylotenera mobilis relies on organic compounds for energy and carbon, utilizing a variety of substrates, including methanol and other one-carbon compounds. This versatility in substrate utilization allows it to thrive in diverse environments, from soil and aquatic ecosystems to the human gut. The presence of Methylotenera mobilis in various body sites across different species highlights its ability to adapt and survive in different niches. As an obligate aerobe, Methylotenera mobilis requires oxygen to grow, which is essential for its energy-producing metabolic processes. Methylotenera mobilis has been found to play a significant role in the biodegradation of methanol and other pollutants, making it a valuable tool in bioremediation efforts. Its ability to utilize one-carbon compounds also makes it a key player in the global carbon cycle, contributing to the breakdown and recycling of organic matter.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola coprocola
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola coprocola
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatlower digestive tract
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola coprocola strain AF24-2 AF24-2.Scaf166, whole genome

Gene Summary

Adenine Count

1061591 bp

Thymine Count

1041659 bp

Guanine Count

719618 bp

Cytosine Count

730676 bp

Genome Length

3553784 bp

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
is982 family transposaseDWY20_00005Not AvailableNegative25 - 93635558.6
hypothetical proteinDWY20_00010Not AvailablePositive1201 - 14439558.84
duf4491 family proteinDWY20_00015Not AvailableNegative1658 - 17804709.96
hypothetical proteinDWY20_00020Not AvailablePositive2016 - 361162263.2
tonb-dependent receptorDWY20_00025Not AvailablePositive3826 - 6855111277.0
ragb/susd family nutrient uptake outer membrane proteinDWY20_00030Not AvailablePositive6874 - 842457358.5
susf/suse family outer membrane proteinDWY20_00035Not AvailablePositive8444 - 996156730.4
cycloisomaltooligosaccharide glucanotransferaseDWY20_00040Not AvailablePositive9982 - 1178167871.9
glycoside hydrolase family 97 proteinDWY20_00045Not AvailablePositive11796 - 1395281878.5
glycoside hydrolase family 31 proteinDWY20_00050Not AvailablePositive14136 - 1662295229.6

Displaying genes 1 – 10 of 2859 in total

Metabolites

477 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da

Displaying 1–10 of 477 metabolites

Health Effects

No health effects information available for this bacterium.