Gluconobacter oxydans 621H

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Acetobacterales

Family

Acetobacteraceae

Genus

Gluconobacter

Description

Gluconobacter oxydans 621H.Genome sequencing of Gluconobacter oxydans 621H (DSM 2343) has identified a number of membrane-bound dehydrogenases. The glucose/sorbitol dehydrogenase is responsible for the oxidation of D-sorbitol, gluconate and glycerol, producing L-sorbose, 5-ketogluconate and dihydroxyacetone, respectively. Other identified membrane-bound dehydrogenases include the alcohol, glucose, and sorbitol dehydrogenases, which are involved in acetate, gluconate, and D-fructose formation, respectively. In addition to the dehydrogenases with a recognized substrate, 75 putative dehydrogenase/oxidoreductases, 23 of which are thought to be membrane bound, have been identified in the genome sequence. Expression studies of G. oxydans grown on glucose has shown that a number of these uncharacterized oxidoreductases are transcribed and presumably have a role in cellular metabolism.The plasmids in G. oxydans strain 621H are not homologous to plasmids from other G. oxydans strains. Identified genes include those for plasmid replication, a DNA helicase II, a restriction/modification system, a heavy metal resistance system and, on the megaplasmid, genes for DNA transfer via conjugation. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderAcetobacterales
FamilyAcetobacteraceae
GenusGluconobacter
SpeciesGluconobacter oxydans
Strain621H

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Gluconobacter oxydans 621H
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Gluconobacter oxydans 621H plasmid pGOX3, complete sequence.

Gene Summary

Adenine Count

3101 bp

Thymine Count

3304 bp

Guanine Count

4529 bp

Cytosine Count

3613 bp

Genome Length

14547 bp

Protein-coding Genes

21 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Hypothetical proteinGOX_RS13815Not AvailablePositive2677928 - 267902240671.0
Putative transposase orfbGOX_RS13825Not AvailablePositive2679383 - 268056945624.6
chromosomal replication initiator protein dnaaGOX_RS01145Not AvailablePositive155 - 159453926.5
dna polymerase iii subunit betaGOX_RS01150Not AvailablePositive1685 - 280940928.1
dna replication/repair protein recfGOX_RS01155Not AvailablePositive2823 - 392640362.0
dna topoisomerase (atp-hydrolyzing) subunit bGOX_RS01160Not AvailablePositive4012 - 645689507.4
duf3108 domain-containing proteinGOX_RS01165Not AvailablePositive6446 - 728229927.8
bifunctional udp-n-acetylglucosamine diphosphorylase/glucosamine-1-phosphate n-acetyltransferase glmuGOX_RS01170Not AvailablePositive7343 - 867747244.7
glutamine--fructose-6-phosphate transaminase (isomerizing)GOX_RS01175Not AvailablePositive8677 - 1050365659.0
fad-binding and (fe-s)-binding domain-containing proteinGOX_RS01180Not AvailablePositive10761 - 1339196309.0

Displaying genes 111 – 120 of 2825 in total

Metabolites

1610 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 1610 metabolites

Health Effects

No health effects information available for this bacterium.