Gluconobacter oxydans 621H

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Acetobacterales

Family

Acetobacteraceae

Genus

Gluconobacter

Description

Gluconobacter oxydans 621H.Genome sequencing of Gluconobacter oxydans 621H (DSM 2343) has identified a number of membrane-bound dehydrogenases. The glucose/sorbitol dehydrogenase is responsible for the oxidation of D-sorbitol, gluconate and glycerol, producing L-sorbose, 5-ketogluconate and dihydroxyacetone, respectively. Other identified membrane-bound dehydrogenases include the alcohol, glucose, and sorbitol dehydrogenases, which are involved in acetate, gluconate, and D-fructose formation, respectively. In addition to the dehydrogenases with a recognized substrate, 75 putative dehydrogenase/oxidoreductases, 23 of which are thought to be membrane bound, have been identified in the genome sequence. Expression studies of G. oxydans grown on glucose has shown that a number of these uncharacterized oxidoreductases are transcribed and presumably have a role in cellular metabolism.The plasmids in G. oxydans strain 621H are not homologous to plasmids from other G. oxydans strains. Identified genes include those for plasmid replication, a DNA helicase II, a restriction/modification system, a heavy metal resistance system and, on the megaplasmid, genes for DNA transfer via conjugation. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderAcetobacterales
FamilyAcetobacteraceae
GenusGluconobacter
SpeciesGluconobacter oxydans
Strain621H

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Gluconobacter oxydans 621H
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Gluconobacter oxydans 621H, complete sequence.

Gene Summary

Adenine Count

521846 bp

Thymine Count

530050 bp

Guanine Count

837123 bp

Cytosine Count

813154 bp

Genome Length

2702173 bp

Protein-coding Genes

2508 genes

Non-Coding Genes

105 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fita-like ribbon-helix-helix domain-containing proteinGOX_RS00955Not AvailablePositive146 - 3979169.08
type ii toxin-antitoxin system vapc family toxinGOX_RS00960Not AvailablePositive394 - 81615232.4
duf6118 family proteinGOX_RS15555Not AvailablePositive816 - 116912802.2
duf6118 family proteinGOX_RS15560Not AvailablePositive1166 - 147111569.2
helix-turn-helix domain-containing proteinGOX_RS00975Not AvailableNegative1695 - 209014533.0
hint domain-containing proteinGOX_RS00980Not AvailableNegative2153 - 389861648.7
recombinase family proteinGOX_RS14320Not AvailablePositive4101 - 469721902.7
recombinase family proteinGOX_RS00985Not AvailablePositive4818 - 541422132.1
para family partition atpaseGOX_RS00990Not AvailablePositive5523 - 617622992.7
ribbon-helix-helix domain-containing proteinGOX_RS00995Not AvailablePositive6173 - 64489866.86

Displaying genes 1 – 10 of 2825 in total

Metabolites

1663 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1663 metabolites

Health Effects

No health effects information available for this bacterium.