Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Putative tail fiber protein | SGRAN_RS04360 | Not Available | Positive | 929002 - 930747 | 60473.0 |
| hypothetical protein | SGRAN_RS22525 | Not Available | Positive | 930744 - 930902 | 5441.64 |
| Minor tail protein | SGRAN_RS04365 | Not Available | Positive | 930919 - 931200 | 10009.9 |
| hypothetical protein | SGRAN_RS04370 | Not Available | Positive | 931197 - 931742 | 19151.3 |
| duf3168 domain-containing protein | SGRAN_RS04375 | Not Available | Positive | 931742 - 932152 | 14072.0 |
| hypothetical protein | SGRAN_RS04380 | Not Available | Negative | 932239 - 932577 | 12093.2 |
| Gene transfer aget (gta) orfg9-like phage major tail protein | SGRAN_RS04385 | Not Available | Positive | 932624 - 933031 | 14014.5 |
| gene transfer agent family protein | SGRAN_RS04390 | Not Available | Positive | 933028 - 933342 | 10822.3 |
| phage tail assembly chaperone | SGRAN_RS04395 | Not Available | Positive | 933346 - 933600 | 8663.95 |
| Putative tail protein | SGRAN_RS04400 | Not Available | Positive | 933593 - 934168 | 18849.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.