Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Is1595 transposase | SGRAN_RS04315 | Not Available | Positive | 920673 - 921635 | 35781.9 |
| hypothetical protein | SGRAN_RS22105 | Not Available | Positive | 921774 - 922610 | 29947.1 |
| hypothetical protein | SGRAN_RS22520 | Not Available | Positive | 922877 - 923020 | 5441.44 |
| hypothetical protein | SGRAN_RS04325 | Not Available | Positive | 923017 - 923226 | 7545.59 |
| hypothetical protein | SGRAN_RS04330 | Not Available | Positive | 923427 - 924044 | 21671.0 |
| Large packaging protein | SGRAN_RS04335 | Not Available | Positive | 924316 - 925650 | 47626.0 |
| Portal protein | SGRAN_RS04340 | Not Available | Positive | 925818 - 926924 | 38338.0 |
| Hypothetical protein | SGRAN_RS04345 | Not Available | Positive | 926938 - 927246 | 10797.2 |
| Putative prohead protease | SGRAN_RS04350 | Not Available | Positive | 927291 - 927695 | 14328.5 |
| Putative major capsid protein | SGRAN_RS04355 | Not Available | Positive | 927701 - 928840 | 39616.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.