Sphingopyxis granuli str. TFA

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis granuli
StrainTFA

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediment of the river Elbe
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis granuli strain TFA chromosome, complete genome.

Gene Summary

Adenine Count

790410 bp

Thymine Count

792050 bp

Guanine Count

1549001 bp

Cytosine Count

1548392 bp

Genome Length

4679853 bp

Protein-coding Genes

4326 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
succinate--coa ligase subunit alphaSGRAN_RS04680Not AvailablePositive986032 - 98692230315.8
giy-yig nuclease family proteinSGRAN_RS04685Not AvailablePositive987028 - 98731811529.9
2-oxoglutarate dehydrogenase e1 componentSGRAN_RS04690Not AvailablePositive987369 - 990188104341.0
2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferaseSGRAN_RS04695Not AvailablePositive990270 - 99149942647.3
dihydrolipoyl dehydrogenaseSGRAN_RS04700Not AvailablePositive991611 - 99300848686.1
amidohydrolaseSGRAN_RS04705Not AvailablePositive993051 - 99441546748.1
trimeric intracellular cation channel family proteinSGRAN_RS04710Not AvailablePositive994429 - 99507021853.2
alpha/beta fold hydrolaseSGRAN_RS04715Not AvailablePositive995127 - 99602932097.9
signal peptide peptidase sppaSGRAN_RS04720Not AvailableNegative996037 - 99801668807.6
nad(p)-dependent oxidoreductaseSGRAN_RS04725Not AvailableNegative998124 - 99904133054.6

Displaying genes 981 – 990 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Average massMonoisotopic mass
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Health Effects

No health effects information available for this bacterium.