Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hit family protein | SGRAN_RS04630 | Not Available | Negative | 976001 - 976429 | 15098.2 |
| cdp-alcohol phosphatidyltransferase family protein | SGRAN_RS04635 | Not Available | Negative | 976426 - 977508 | 40200.4 |
| glycosyltransferase | SGRAN_RS04640 | Not Available | Negative | 977501 - 978613 | 39936.8 |
| had family phosphatase | SGRAN_RS04645 | Not Available | Negative | 978679 - 979371 | 25341.7 |
| lipopolysaccharide biosynthesis protein | SGRAN_RS04650 | Not Available | Negative | 979384 - 980916 | 53170.5 |
| succinate dehydrogenase iron-sulfur subunit | SGRAN_RS04655 | Not Available | Positive | 981059 - 981841 | 29410.1 |
| paai family thioesterase | SGRAN_RS04660 | Not Available | Positive | 981888 - 982379 | 17851.3 |
| cell division protein zape | SGRAN_RS04665 | Not Available | Positive | 982414 - 983556 | 41927.3 |
| polysaccharide deacetylase family protein | SGRAN_RS04670 | Not Available | Negative | 983506 - 984549 | 38106.0 |
| malate dehydrogenase | SGRAN_RS04675 | Not Available | Positive | 984952 - 985914 | 33429.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.