Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc-f family atp-binding cassette domain-containing protein | SGRAN_RS04270 | Not Available | Negative | 906729 - 908309 | 55699.6 |
| magnesium and cobalt transport protein cora | SGRAN_RS04275 | Not Available | Negative | 908431 - 909399 | 35836.1 |
| blai/meci/copy family transcriptional regulator | SGRAN_RS04280 | Not Available | Positive | 909834 - 910211 | 13433.1 |
| m56 family metallopeptidase | SGRAN_RS04285 | Not Available | Positive | 910208 - 911887 | 58113.7 |
| hypothetical protein | SGRAN_RS04290 | Not Available | Positive | 911999 - 912757 | 25628.4 |
| tonb-dependent siderophore receptor | SGRAN_RS04295 | Not Available | Positive | 912754 - 914838 | 76657.6 |
| m28 family metallopeptidase | SGRAN_RS04300 | Not Available | Negative | 915048 - 916709 | 59209.1 |
| prolyl aminopeptidase | SGRAN_RS04305 | Not Available | Positive | 916908 - 917999 | 39623.9 |
| s9 family peptidase | SGRAN_RS04310 | Not Available | Negative | 918006 - 920168 | 76323.2 |
| ompa family protein | SGRAN_RS04430 | Not Available | Positive | 940529 - 941647 | 38695.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.