Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SGRAN_RS04025 | Not Available | Negative | 846805 - 847203 | 14700.8 |
| queuosine precursor transporter | SGRAN_RS04030 | Not Available | Negative | 847210 - 847971 | 27872.8 |
| Trna-arg | Not Available | Not Available | Positive | 848044 - 848120 | Not Available |
| alpha/beta fold hydrolase | SGRAN_RS04040 | Not Available | Negative | 848298 - 848969 | 24371.2 |
| duf885 family protein | SGRAN_RS04045 | Not Available | Negative | 849087 - 850787 | 63920.9 |
| tonb-dependent receptor domain-containing protein | SGRAN_RS04050 | Not Available | Positive | 851249 - 854092 | 101547.0 |
| prolyl oligopeptidase family serine peptidase | SGRAN_RS04055 | Not Available | Positive | 854176 - 856413 | 82412.9 |
| duf885 family protein | SGRAN_RS04060 | Not Available | Positive | 856415 - 858088 | 61887.0 |
| duf3830 family protein | SGRAN_RS04065 | Not Available | Positive | 858097 - 858576 | 16893.4 |
| bile acid:sodium symporter family protein | SGRAN_RS04070 | Not Available | Positive | 858589 - 859488 | 32816.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.