Sphingopyxis granuli str. TFA

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis granuli
StrainTFA

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediment of the river Elbe
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis granuli strain TFA chromosome, complete genome.

Gene Summary

Adenine Count

790410 bp

Thymine Count

792050 bp

Guanine Count

1549001 bp

Cytosine Count

1548392 bp

Genome Length

4679853 bp

Protein-coding Genes

4326 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ccdb family proteinSGRAN_RS03635Not AvailableNegative774304 - 77460010840.4
type ii toxin-antitoxin system ccda family antitoxinSGRAN_RS03640Not AvailableNegative774600 - 7748459260.88
2-polyprenylphenol 6-hydroxylaseSGRAN_RS03645Not AvailableNegative774890 - 77643456688.4
class i sam-dependent methyltransferaseSGRAN_RS03650Not AvailableNegative776575 - 77731227136.5
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyaseSGRAN_RS03655Not AvailablePositive777407 - 77821929093.2
30s ribosomal protein s20SGRAN_RS03660Not AvailablePositive778407 - 7786709419.59
chromosomal replication initiator protein dnaaSGRAN_RS03665Not AvailablePositive779171 - 78053250008.7
duf4136 domain-containing proteinSGRAN_RS03670Not AvailableNegative780587 - 78127925220.7
tryptophan--trna ligaseSGRAN_RS03675Not AvailableNegative781400 - 78241636515.8
murein biosynthesis integral membrane protein murjSGRAN_RS03680Not AvailableNegative782420 - 78402757146.2

Displaying genes 791 – 800 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.