Sphingopyxis granuli str. TFA

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis granuli
StrainTFA

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediment of the river Elbe
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis granuli strain TFA chromosome, complete genome.

Gene Summary

Adenine Count

790410 bp

Thymine Count

792050 bp

Guanine Count

1549001 bp

Cytosine Count

1548392 bp

Genome Length

4679853 bp

Protein-coding Genes

4326 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf6771 family proteinSGRAN_RS22450Not AvailableNegative28473 - 286406147.32
heavy-metal-associated domain-containing proteinSGRAN_RS00135Not AvailableNegative29057 - 292667133.42
heavy metal translocating p-type atpaseSGRAN_RS00140Not AvailablePositive29415 - 3194987068.6
cu(i)-responsive transcriptional regulatorSGRAN_RS00145Not AvailablePositive31946 - 3244018527.0
efflux rnd transporter periplasmic adaptor subunitSGRAN_RS00150Not AvailablePositive32712 - 3387841071.8
efflux rnd transporter permease subunitSGRAN_RS00155Not AvailablePositive33875 - 37054112230.0
efflux transporter outer membrane subunitSGRAN_RS00160Not AvailablePositive37051 - 3849650216.7
duf6527 family proteinSGRAN_RS00165Not AvailableNegative38631 - 3901714323.6
thif family adenylyltransferaseSGRAN_RS00170Not AvailableNegative39014 - 4039049884.1
e2/ubc family proteinSGRAN_RS00175Not AvailableNegative40405 - 4078814735.7

Displaying genes 71 – 80 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
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Health Effects

No health effects information available for this bacterium.