Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribonuclease e/g | SGRAN_RS03585 | Not Available | Negative | 760879 - 763539 | 97296.1 |
| n-acetylmuramoyl-l-alanine amidase | SGRAN_RS03590 | Not Available | Positive | 764161 - 765423 | 45251.1 |
| dsd1 family plp-dependent enzyme | SGRAN_RS03595 | Not Available | Positive | 765497 - 766642 | 39289.0 |
| penicillin-binding protein 1a | SGRAN_RS03600 | Not Available | Positive | 766730 - 769246 | 91457.5 |
| peptide chain release factor 2 | SGRAN_RS03605 | Not Available | Positive | 769315 - 770442 | 41629.9 |
| class i sam-dependent methyltransferase | SGRAN_RS03610 | Not Available | Positive | 770442 - 771182 | 27001.2 |
| dsre family protein | SGRAN_RS03615 | Not Available | Negative | 771417 - 771782 | 12131.8 |
| hesa/moeb/thif family protein | SGRAN_RS03620 | Not Available | Negative | 771770 - 772519 | 26111.5 |
| copper resistance protein copc | SGRAN_RS03625 | Not Available | Negative | 772608 - 773069 | 15917.0 |
| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabc | SGRAN_RS03630 | Not Available | Negative | 773032 - 774300 | 44438.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.