Sphingopyxis granuli str. TFA

Rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis granuli
StrainTFA

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsediment of the river Elbe
Biotic relationshipNot Available
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis granuli strain TFA chromosome, complete genome.

Gene Summary

Adenine Count

790410 bp

Thymine Count

792050 bp

Guanine Count

1549001 bp

Cytosine Count

1548392 bp

Genome Length

4679853 bp

Protein-coding Genes

4326 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l28SGRAN_RS03535Not AvailableNegative749199 - 74949210602.8
trna adenosine(34) deaminase tadaSGRAN_RS03540Not AvailablePositive749623 - 75007816042.3
nad-dependent deacylaseSGRAN_RS03545Not AvailableNegative750101 - 75080526046.8
4-hydroxy-tetrahydrodipicolinate reductaseSGRAN_RS03550Not AvailablePositive750916 - 75164425298.5
endonuclease iiiSGRAN_RS03555Not AvailablePositive751651 - 75230723909.2
m20/m25/m40 family metallo-hydrolaseSGRAN_RS03560Not AvailablePositive752433 - 75380347211.4
fad-dependent oxidoreductaseSGRAN_RS03565Not AvailablePositive754144 - 75536443674.7
nad(p)/fad-dependent oxidoreductaseSGRAN_RS03570Not AvailablePositive755361 - 75696557330.9
thioredoxin domain-containing proteinSGRAN_RS03575Not AvailableNegative756976 - 75855054086.4
m48 family metalloproteaseSGRAN_RS03580Not AvailableNegative758605 - 76000249801.8

Displaying genes 771 – 780 of 4401 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.