Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arm dna-binding domain-containing protein | SGRAN_RS03485 | Not Available | Positive | 739088 - 740224 | 44066.8 |
| Trna-glu | Not Available | Not Available | Positive | 740434 - 740508 | Not Available |
| lrp/asnc family transcriptional regulator | SGRAN_RS03495 | Not Available | Negative | 740607 - 741119 | 18651.8 |
| dmt family transporter | SGRAN_RS03500 | Not Available | Positive | 741218 - 742192 | 34168.7 |
| class i adenylate-forming enzyme family protein | SGRAN_RS03505 | Not Available | Positive | 742373 - 744076 | 61241.2 |
| s41 family peptidase | SGRAN_RS03510 | Not Available | Negative | 744097 - 745554 | 50460.6 |
| rlme family rna methyltransferase | SGRAN_RS03515 | Not Available | Negative | 745574 - 746305 | 26039.2 |
| ppx/gppa phosphatase family protein | SGRAN_RS03520 | Not Available | Negative | 746302 - 747396 | 39151.2 |
| glycine zipper 2tm domain-containing protein | SGRAN_RS03525 | Not Available | Negative | 747599 - 748000 | 14658.1 |
| esterase-like activity of phytase family protein | SGRAN_RS03530 | Not Available | Positive | 748163 - 749161 | 35930.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.