Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SGRAN_RS03390 | Not Available | Negative | 724754 - 724990 | 8405.46 |
| hypothetical protein | SGRAN_RS03395 | Not Available | Negative | 724987 - 725496 | 18727.2 |
| hypothetical protein | SGRAN_RS03400 | Not Available | Negative | 725493 - 725903 | 14915.5 |
| hypothetical protein | SGRAN_RS03405 | Not Available | Negative | 725900 - 726226 | 11623.6 |
| trac family protein | SGRAN_RS03410 | Not Available | Negative | 726223 - 728739 | 93052.5 |
| trav family lipoprotein | SGRAN_RS03415 | Not Available | Negative | 728736 - 729338 | 21758.0 |
| trab/virb10 family protein | SGRAN_RS03420 | Not Available | Negative | 729374 - 730687 | 44670.3 |
| type-f conjugative transfer system secretin trak | SGRAN_RS03425 | Not Available | Negative | 730684 - 731442 | 26837.2 |
| trae/trak family type iv conjugative transfer system protein | SGRAN_RS03430 | Not Available | Negative | 731426 - 732064 | 23668.4 |
| type iv conjugative transfer system protein tral | SGRAN_RS03435 | Not Available | Negative | 732073 - 732339 | 10286.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.