Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2958 domain-containing protein | SGRAN_RS00085 | Not Available | Positive | 18359 - 18781 | 14775.8 |
| parb/repb/spo0j family partition protein | SGRAN_RS00090 | Not Available | Positive | 18883 - 20937 | 74981.8 |
| hypothetical protein | SGRAN_RS00095 | Not Available | Positive | 21153 - 22751 | 59949.0 |
| m28 family peptidase | SGRAN_RS00100 | Not Available | Positive | 22756 - 23721 | 35186.3 |
| hypothetical protein | SGRAN_RS22030 | Not Available | Positive | 23721 - 23963 | 8841.09 |
| toprim domain-containing protein | SGRAN_RS00105 | Not Available | Positive | 23975 - 25012 | 37421.9 |
| res family nad+ phosphorylase | SGRAN_RS00110 | Not Available | Negative | 25062 - 25751 | 25240.8 |
| antitoxin xre-like helix-turn-helix domain-containing protein | SGRAN_RS00115 | Not Available | Negative | 25756 - 26139 | 14133.0 |
| slog family protein | SGRAN_RS00120 | Not Available | Positive | 26532 - 27473 | 35584.1 |
| hepn domain-containing protein | SGRAN_RS00125 | Not Available | Positive | 27537 - 28463 | 36105.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.