Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingopyxidaceae
Genus
Sphingopyxis
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingopyxidaceae |
| Genus | Sphingopyxis |
| Species | Sphingopyxis granuli |
| Strain | TFA |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | sediment of the river Elbe |
| Biotic relationship | Not Available |
| Host(s) | Oryza sativa |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
790410 bp
Thymine Count
792050 bp
Guanine Count
1549001 bp
Cytosine Count
1548392 bp
Genome Length
4679853 bp
Protein-coding Genes
4326 genes
Non-Coding Genes
75 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | SGRAN_RS03065 | Not Available | Negative | 651525 - 651839 | 10888.2 |
| phosphoenolpyruvate carboxykinase | SGRAN_RS03070 | Not Available | Positive | 652248 - 653825 | 57219.8 |
| duf983 domain-containing protein | SGRAN_RS03075 | Not Available | Positive | 653872 - 654309 | 15953.0 |
| cell division protein zape | SGRAN_RS03080 | Not Available | Positive | 654413 - 655588 | 43948.9 |
| hypothetical protein | SGRAN_RS23110 | Not Available | Positive | 655585 - 655719 | 5308.43 |
| hypothetical protein | SGRAN_RS03085 | Not Available | Negative | 655822 - 656238 | 15332.3 |
| dps family protein | SGRAN_RS03090 | Not Available | Negative | 656324 - 656803 | 17677.2 |
| tlpa disulfide reductase family protein | SGRAN_RS03095 | Not Available | Negative | 656826 - 657614 | 27643.0 |
| cytochrome bd-i oxidase subunit cydx | SGRAN_RS21475 | Not Available | Negative | 657627 - 657737 | 4066.82 |
| cytochrome d ubiquinol oxidase subunit ii | SGRAN_RS03100 | Not Available | Negative | 657752 - 658900 | 41298.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.